I did manage to get this to work this morning. As I mentioned, I have a Freaduino Leonardo clone. This has a selector switch for 3.3v and 5v IO. I decided to go back and try with it at 3.3v and not use logic converters. It also has a ICSP breakout for SPI/IIC. I re-wired this thing many times, but was only able to get it to work when I wired it directly to the ICSP breakout and used the VCC/ground on the ICSP breakout as well. I tried the 3.3v on from one of the other pins on the board and 3.3v from a breadboarded power supply. Maybe it's something more simple that I just don't understand or missed, but it doesn't make sense to me. I made sure the 3.3v was there with each wiring change.
I did however set the following:
// RFM69 SPI chip select pin
#define MY_RFM69_CS_PIN 6
// Define this to override the default RFM69 IRQ pin assignment
#define MY_RFM69_IRQ_PIN 2
// RFM69 IRQ number
#define MY_RFM69_IRQ_NUM 1
And the log shows:
565 GWT:TIN:IP=192.168.0.75
1565 MCO:BGN:STP
1566 MCO:BGN:INIT OK,TSP=1
1566 TSM:READY:NWD REQ
1566 RFM69:SWR:SEND,TO=255,SEQ=0,RETRY=0
1568 RFM69:CSMA:RSSI=-97
3569 TSF:MSG:SEND,0-0-255-255,s=255,c=3,t=20,pt=0,l=0,sg=0,ft=0,st=OK:
I know @Carywin mentioned extending the ICSP connector through the shield and used that. Maybe that's why it worked for him.