I think I might have found the root of the problem. The ./configure detects my Rpi2 as such (rpi2) but in the RPi.cpp in line 26 there is the pin to GPIO translation array and it is lacking translations for the high pin numbers - which is obviously wrong as on the RPi2 you have the extended GPIO connector with 40 pins...
const static int pin_to_gpio_rev1[41] = {-1, -1, -1, 0, -1, 1, -1, 4, 14, -1, 15, 17, 18, 21, -1, 22, 23, -1, 24, 10, -1, 9, 25, 11, 8, -1, 7, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1 };
const static int pin_to_gpio_rev2[41] = {-1, -1, -1, 2, -1, 3, -1, 4, 14, -1, 15, 17, 18, 27, -1, 22, 23, -1, 24, 10, -1, 9, 25, 11, 8, -1, 7, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1 };
const static int pin_to_gpio_rev3[41] = {-1, -1, -1, 2, -1, 3, -1, 4, 14, -1, 15, 17, 18, 27, -1, 22, 23, -1, 24, 10, -1, 9, 25, 11, 8, -1, 7, -1, -1, 5, -1, 6, 12, 13, -1, 19, 16, 26, 20, -1, 21 };
I copied the rev3 array to the rev2 array and compiled this and it seems to work in my case!