Ok. So my strange error was due to connecting GND to the wrong PIN.
I was connecting GND next to VCC on the side of the Pro Mini.
Accordning to pics on the MySensors homepage and to the marking of my Arduino that pin is GND.
But when connecting the FTDI with jumper cables I notice that PIN was marked with CTS.
So instead I connected GND to the pin one step out.
This PIN is also marked GND on my Arduino, and on the FTDI. But marked BLK on the pictures on MySensors home page.
So it seems that both these pins are GND on my board, because everything else was working fine except the reference for analogue pins.
So topic solved. Thanks for all input. And specally @gohan that made me use the jumper cables and therfore found the error.