I've been planning on using JST PH (2.0 mm pitch) connectors on my custom PCB's to connect the external connectors (GX12, 3.5 mm headphone jacks, 5.5 mm power sockets) from the sensor case to the board. They're nice in that they're fairly small, polarized, and cheap. But - you need to buy a good crimper - the pins are incredibly tiny. I almost decided to by the plugs with wires attached because they're so hard to crimp. None the crimpers I own was small enough so I ordered the (Engineer PA 09)]http://www.ebay.com/itm/Engineer-PA-09-Mini-Molex-Amp-JST-Crimp-Tool-Wire-Terminal-Crimping-Pliers-/252030460510?hash=item3aae2fa25e] which seems to be the cheapest "good" option.
Another option on the board (I wouldn't use these on the sensor case) are Dupont 2-pin connector. These "Dupont" connectors require a female pin (which is also really cheap) and push on to standard 0.1" pitch pins on a PCB (like the 4x2 NRF radios). They have the advantage that they use less space than the JST connectors but are not polarized. Search for "Dupont connector" on ebay to find tons of options. I can't decide if the easier crimping and less board space are worth the risk of mounting connectors backwards and potentially wrecking components.