I would think that the "heavy lifting" of regulating the actual output power of the charger would be a function of the charge controller itself? Maybe you could tie into / control that somehow with your own microcontroller as brain / interface? Maybe they expose some API, serial, or other method of interfacing with their hardware?
What are/were you using for charge controller?
Also, what is "CT" in this context?
I have read a bit here and there about solar (and related moving around and controlling of power, eg. batteries, charge controllers, etc...), as it is something I plan on doing "eventually" although I have no direct experience as of yet. So I will be following this thread with interest.